Class SamHeader

java.lang.Object
org.snpeff.sam.SamHeader
All Implemented Interfaces:
Iterable<String>
public class SamHeader extends Object implements Iterable<String>
Sam header
Author:
pcingola

  • Constructor Details

    • SamHeader

      public SamHeader()

  • Method Details

    • add

      public void add(SamHeaderRecord samHeaderRecord)
      Add a record to the header

    • addHeaderRecord

      public void addHeaderRecord(String line)

    • getRecords

      public ArrayList<SamHeaderRecord> getRecords(String recordType)
      Get a list of records for this 'recordType'
      Parameters:
      recordType -
      Returns:
      A new empty list is created if no records are available

    • iterator

      public Iterator<String> iterator()
      Specified by:
      iterator in interface Iterable<String>