Class IntervalNodeOri

java.lang.Object
org.snpeff.interval.tree.IntervalNodeOri
All Implemented Interfaces:
Serializable, Iterable<Marker>
public class IntervalNodeOri extends Object implements Serializable, Iterable<Marker>
The Node class contains the interval tree information for one single node
See Also:

  • Constructor Details

    • IntervalNodeOri

      public IntervalNodeOri()

    • IntervalNodeOri

      public IntervalNodeOri(Markers markers)

  • Method Details

    • getCenter

      public Integer getCenter()

    • getLeft

      public IntervalNodeOri getLeft()

    • getRight

      public IntervalNodeOri getRight()

    • iterator

      public Iterator<Marker> iterator()
      Specified by:
      iterator in interface Iterable<Marker>

    • query

      public Markers query(Interval target)
      Perform an interval intersection query on the node
      Parameters:
      target - : the interval to intersect
      Returns:
      all intervals containing 'target'

    • stab

      public Markers stab(Integer point)
      Perform a stabbing query on the node
      Parameters:
      point - the time to query at
      Returns:
      all intervals containing time

    • toString

      public String toString()
      Overrides:
      toString in class Object