Class GenericMarkerFileIterator
java.lang.Object
org.snpeff.fileIterator.FileIterator<GenericMarker>
org.snpeff.fileIterator.MarkerFileIterator<GenericMarker>
org.snpeff.fileIterator.GenericMarkerFileIterator
- All Implemented Interfaces:
Iterable<GenericMarker>, Iterator<GenericMarker>
Opens a file and creates generic markers (one per line)
- Author:
- pcingola
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Field Summary
Fields inherited from class MarkerFileIterator
createChromos, genome, ignoreChromosomeErrors, inOffset -
Constructor Summary
ConstructorsConstructorDescriptionGenericMarkerFileIterator(String fileName, int colChr, int colStart, int colEnd, int inOffset) -
Method Summary
Methods inherited from class MarkerFileIterator
getChromosome, getGenome, init, isIgnoreChromosomeErrors, loadMarkers, parsePosition, sanityCheckChromo, setCreateChromos, setIgnoreChromosomeErrors, setInOffsetMethods inherited from class FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, isDebug, iterator, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toStringMethods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, waitMethods inherited from interface Iterable
forEach, spliteratorMethods inherited from interface Iterator
forEachRemaining
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Constructor Details
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GenericMarkerFileIterator
public GenericMarkerFileIterator(String fileName, int colChr, int colStart, int colEnd, int inOffset)
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Method Details
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readNext
Description copied from class:FileIteratorRead next element- Specified by:
readNextin classFileIterator<GenericMarker>
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